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The tiers that will be present on this post will be based on Smogon's tiers, but I will put Pokemon depending on usage on Elite Four teams, PvP teams and total usags.

The order the Pokemon will be will be by Pokedex number in Project: Pokemon.

Ubers

Pokemon that are considered too strong or too broken for this game. They are phenomenal and have abnormal stats and moves. 

This list is based on Project: Pokemon's Rated Battle Banlist

Mewtwo

Lugia

Ho-Oh

Rayquazza

Darkrai

Groudon

Kyogre

Slaking

Palkia

Dialga

Giratina

Kyurem

Arceus (Unobtainable)

Regigigas

Volcarona

Deoxys

Reshiram

Zekrom

OverUsed (OU)

Pokemon that are commonly found in most teams of the game and are very strong and capable of beating other Pokemon easily.

Mega Charizard X

Mega Charizard Y

Mega Blastoise

Mega Beedrill

Alakazam

Mega Alakazam

Mega Slowbro

Gengar

Mega Gengar

Chansey

Mega Gyarados

Snorlax

Zapdos

Dragonite

Mega Blaziken

Salamence

Mega Salamence

Mega Metagross

Raikou

Entei

Suicune

Scizor

Mega Scizor

Tyranitar

Mega Tyranitar

Blissey

Mega Latias

Mega Latios

Mega Lucario

Weavile

Togekiss

Mega Absol

Mega Heracross

Gardevoir

Mega Gardevoir

Gallade

Mega Gallade

Mega Lopunny

Cresselia

Garchomp

Keldeo

Heatran

Victini

Scrafty

Mega Sableye

Shaymin-Sky

Mega Manectric

Mega Houndoom

Genesect

Porygon-Z

Thundurus

Azumarill

Chandelure

Diggersby

Greninja

Klefki

Celesteela

Kartana

Pheromosa

UnderUsed (UU)

Pokemon that have a lot of potential of acheiving great things, but they are slightly outclassed by the Pokemon of the OU tier.

Mega Venusaur

Dugtrio

Arcanine

Slowbro

Cloyster

Starmie

Mega Pinsir

Gyarados

Jolteon

Mega Aerodactyl

Moltres

Mew

Mega Sceptile

Mega Swampert

Metagross

Crobat

Skarmory

Espeon

Mega Aggron

Latias

Latios

Lucario

Magnezone

Heracross

Mamoswine

Infernape

Breloom

Dusclops

Staraptor

Mega Camerupt

Mega Altaria

Haxorus

Hydreigon

Cobalion

Mega Ampharos

Mega Sharpedo

Sableye

Mega Mawile

Rotom-Wash

Houndoom

Azelf

Tornadus

Porygon2

Medicham

Bisharp

Excadrill

Reuniclus

Meloetta

Sylveon

Talonflame

Mega Diancie

Landorus

Buzzwole

Nihilego

Xurkitree

RarelyUsed (RU)

Pokemon that have potential, but are outclassed by Pokemon in the higher tiers and need support to succed.

Venusaur

Charizard

Blastoise

Mega Pidgeot

Nidoking

Venomoth

Machamp

Magneton

Electrode

Marowak

Scyther

Lapras

Vaporeon

Articuno

Typhlosion

Sceptile

Blaziken

Swampert

Mega Steelix

Flygon

Kingdra

Tangrowth

Sneasel

Yanmega

Honchkrow

Celebi

Jirachi

Empoleon

Manaphy

Mega Garchomp

Spiritomb

Jellicent

Mega Glalie

Milotic

Roserade

Mega Banette

Registeel

Quagsire

Eelektross

Terrakion

Virizion

Sharpedo

Serperior

Krookodile

Shaymin

Rotom-Heat

Rotom-Mow

Mesprit

Uxie

Shuckle

Donphan

Conkeldurr

Accelgor

Mega Audino

Darmanitan

Chesnaught

Pangoro

Goodra

Hawlucha

Tyrantrum

Diancie

Noivern

Decidueye

Incineroar

Primarina

Vikavolt

Ribombee

Dhelmise

Scolipede

Crabominable

Necrozma

NeverUsed (NU)

Pokemon that are almost completely outclassed and almost forgotten, but they have some redeeming qualities.

Butterfree

Pidgeot

Raichu

Nidoqueen

Clefable

Ninetales

Primeape

Hitmonlee

Hitmonchan

Jynx

Pinsir

Kabutops

Aerodactyl

Feraligatr

Steelix

Aggron

Rhyperior

Electivire

Magmortar

Glaceon

Togetic

Mismagius

Drapion

Absol

Gliscor

Torterra

Dusknoir

Froslass

Ludicolo

Bronzong

Lunatone

Solrock

Regirock

Durant

Swellow

Golurk

Ambipom

Wailord

Toxicroak

Emboar

Samurott

Rotom-Fan

Mantine

Armaldo

Manectric

Druddigon

Stoutland

Escavalier

Gigalith

Slowking

Delphox

Dragalge

Clawitzer

Lurantis

Heliolisk

Gumshoos

Drampa

Mudsdale

Toucannon

Salazzle

Galvantula

Granbull

Guzzlord

PartiallyUsed (PU)

Pokemon that are even more outclassed than NU Pokemon. They are forgotten and almost never play a major role in the game except for Pokedex Fillers.

Beedrill

Raticate

Fearow

Arbok

Sandslash

Wigglytuff

Vileplume

Parasect

Persian

Golduck

Poliwrath

Victreebel

Tentacruel

Golem

Rapidash

Farfetch'd

Dodrio

Dewgong

Muk

Onix

Hypno

Kingler

Exeggutor

Weezing

Rhydon

Kangashkan

Seaking

Mr. Mime

Electabuzz

Magmar

Tauros

Ditto

Flareon

Omastar

Meganium

Umbreon

Delibird

Lickilicky

Leafeon

Shiftry

Tropius

Gligar

Luxray

Lopunny

Walrein

Glalie

Lanturn

Floatzel

Zangoose

Seviper

Camerupt

Rampardos

Exploud

Altaria

Drifblim

Banette

Regice

Jumpluff

Mawile

Probopass

Rotom

Rotom-Frost

Noctowl

Octillery

Pelipper

Relicanth

Claydol

Grumpig

Torkoal

Pachirisu

Xatu

Hitmontop

Bastiodon

Swoobat

Crustle

Klinklang

Beeheeyem

Stunfisk

Dunsparce

Stantler

Audino

Sigilyph

Chatot

Mightyena

Aurorus

Trevenant

Dedenne

Gogoat

Watchog

Vespiquen

Leavanny

Zebstrika

Cacturne

Liepard

Simisage

Simisear

Simipour

Hariyama

Vanilluxe

Phione

Linoone

Skuntank

Bibarel

Spinda

Ursaring

Furret

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